SeekSpace™ Tools v1.0.3
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Updated: 2026-05-14
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Overview
SeekSpace™ Tools is a bioinformatics software developed by SeekGene for processing single-cell spatial transcriptomics data. It utilizes SeekSoul™ Tools as its core engine for single-cell transcriptomics data processing (including Cell Barcode quantification, cell calling, and cell expression matrix generation), and features specialized extensions for spatial omics technologies.
For spatial libraries, SeekSpace™ Tools primarily provides the following analysis modules:
- Spatial Cell Mapping: Maps individual cells to their physical coordinates on the chip by resolving the relationship between spatial tags and cell barcodes.
- Tissue Image Segmentation: Automatically processes tissue slide images to segment effective tissue regions from the background.
- Downstream Data Analysis: Performs clustering and differential gene expression analysis on successfully mapped cells.
- Spatial Visualization: Overlays clustering results onto in situ tissue images to achieve spatial visualization of the data.