SeekArc™ Tools v1.1.0

Author: SeekGene

Time: 1 min

Words: 123 words

Updated: 2026-02-26

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SeekArc™ Tools

Overview

SeekArc™ Tools v1.1.0 is a software suite developed by SeekGene for processing single-cell ATAC multi-omics data. The software processes transcriptome and ATAC libraries separately, performing tasks such as barcode extraction and correction, and alignment. It quantifies each barcode, jointly determines cells, and generates cell expression matrices for downstream analysis, enabling clustering, differential analysis, and calculation of gene-peak linkages.

Release Notes

v1.1.0

Optimizations and Upgrades

• Added --chemistry parameter, options: DD_AG, DD5_AG.
• Renamed seekarctools_py to seekarctools.
• Changed call peak parameter --qvalue from 0.05 to 0.001.
• Modified the joint cell determination method. Extended peaks range. Limited the maximum number of cells to 20,000 during automatic determination.