Outputs

Author: SeekGene

Time: 1 min

Words: 177 words

Updated: 2026-02-26

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SeekArc™ Tools

Below is the output directory structure: Each line represents a file or folder, denoted by "├──", and numbers indicate important output files.

./
├── outs
│   ├── filtered_feature_bc_matrix              1
│   │   ├── barcodes.tsv.gz
│   │   ├── features.tsv.gz
│   │   └── matrix.mtx.gz
│   ├── filtered_peaks_bc_matrix                2
│   │   ├── barcodes.tsv.gz
│   │   ├── features.tsv.gz
│   │   └── matrix.mtx.gz
│   ├── raw_feature_bc_matrix                   3
│   │   ├── barcodes.tsv.gz
│   │   ├── features.tsv.gz
│   │   └── matrix.mtx.gz
│   ├── raw_peaks_bc_matrix                     4
│   │   ├── barcodes.tsv.gz
│   │   ├── features.tsv.gz
│   │   └── matrix.mtx.gz
│   ├── demo_A_fragments.tsv.gz                 5
│   ├── demo_A_fragments.tsv.gz.tbi             6
│   ├── demo_A_mem_pe_Sort.bam                  7
│   ├── demo_A_peaks.bed                        8
│   ├── demo_E_SortedByName.bam                 9
│   ├── demo.rds                                10
│   ├── demo_report.html                        11
│   └── demo_summary.csv                        12
└── analysis

1. Transcriptome cell sparse matrix.
2. ATAC cell sparse matrix.
3. Transcriptome raw sparse matrix.
4. ATAC raw sparse matrix.
5. Fragments file.
6. Fragments file index.
7. ATAC bam file.
8. Peaks file.
9. Transcriptome bam file.
10. Sample results in rds format.
11. Sample html report.
12. Sample QC information in csv format.